RNA Data Analysis and Research

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This function for predicting common sub-structure takes a group of RNA sequences as the input and tries to find the motif that is common to these sequences. If such a motif is detected, it becomes very useful in determining the functionality of the RNA molecule. A group of RNA sequences that are known to be performing a similar function will most likely have a good deal of similarity in their structures too. By inferring the common substructure, it becomes possible to study these RNA molecules further.


Sample RNA sequence dataset

Paste input below         OR        Upload from file                       

Gap penalty                                        (default -2)

Folding parameters:

Range of folding free energy          (default: 0 kcal/mol)

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